sp nov Search Results


shipworm endosymbiont teredinibacter turnerae t7902  (ATCC)
93
ATCC shipworm endosymbiont teredinibacter turnerae t7902
Synteny plot comparing the previously published genome of T. turnerae <t>T7902</t> (GCA_000379165.1) and the new genome sequence and assembly presented here (GCA_037935975.1). A MUMmer3 plot was generated with NUCmer v3.1 using default settings to assess synteny and completion. Minimum exact matches of 20bp are represented as a dot with lines representing exact match lengths >20bp. Forward matches are displayed in red, while reverse matches are shown in blue.
Shipworm Endosymbiont Teredinibacter Turnerae T7902, supplied by ATCC, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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culture collection accession number atcc pta  (ATCC)
90
ATCC culture collection accession number atcc pta
Synteny plot comparing the previously published genome of T. turnerae <t>T7902</t> (GCA_000379165.1) and the new genome sequence and assembly presented here (GCA_037935975.1). A MUMmer3 plot was generated with NUCmer v3.1 using default settings to assess synteny and completion. Minimum exact matches of 20bp are represented as a dot with lines representing exact match lengths >20bp. Forward matches are displayed in red, while reverse matches are shown in blue.
Culture Collection Accession Number Atcc Pta, supplied by ATCC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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atcc 43961  (ATCC)
93
ATCC atcc 43961
Synteny plot comparing the previously published genome of T. turnerae <t>T7902</t> (GCA_000379165.1) and the new genome sequence and assembly presented here (GCA_037935975.1). A MUMmer3 plot was generated with NUCmer v3.1 using default settings to assess synteny and completion. Minimum exact matches of 20bp are represented as a dot with lines representing exact match lengths >20bp. Forward matches are displayed in red, while reverse matches are shown in blue.
Atcc 43961, supplied by ATCC, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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cdc group a 3  (ATCC)
93
ATCC cdc group a 3
Isolates used in this study a
Cdc Group A 3, supplied by ATCC, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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jannaschia marina sp. nov  (BioResource International Inc)
90
BioResource International Inc jannaschia marina sp. nov
Isolates used in this study a
Jannaschia Marina Sp. Nov, supplied by BioResource International Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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barrosi sp. nov  (Oceanites Inc)
90
Oceanites Inc barrosi sp. nov
Isolates used in this study a
Barrosi Sp. Nov, supplied by Oceanites Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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type strain of c. fonsecae sp. nov  (Federation of European Neuroscience Societies)
90
Federation of European Neuroscience Societies type strain of c. fonsecae sp. nov
Isolates used in this study a
Type Strain Of C. Fonsecae Sp. Nov, supplied by Federation of European Neuroscience Societies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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bacillus piscicola sp. nov  (BioResource International Inc)
90
BioResource International Inc bacillus piscicola sp. nov
Isolates used in this study a
Bacillus Piscicola Sp. Nov, supplied by BioResource International Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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aeriscardovia aeriphila gen. nov., sp. nov  (NCIMB Ltd)
90
NCIMB Ltd aeriscardovia aeriphila gen. nov., sp. nov
Isolates used in this study a
Aeriscardovia Aeriphila Gen. Nov., Sp. Nov, supplied by NCIMB Ltd, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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massilia albidiflava sp. nov. (type strain 45t=cctcc ab 204071t=kctc 12343t  (China Center for Type Culture Collection)
90
China Center for Type Culture Collection massilia albidiflava sp. nov. (type strain 45t=cctcc ab 204071t=kctc 12343t
Isolates used in this study a
Massilia Albidiflava Sp. Nov. (Type Strain 45t=Cctcc Ab 204071t=Kctc 12343t, supplied by China Center for Type Culture Collection, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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methylothermus subterraneus sp. nov  (Makita)
90
Makita methylothermus subterraneus sp. nov
Isolates used in this study a
Methylothermus Subterraneus Sp. Nov, supplied by Makita, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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thermococcus piezophilus sp. nov  (Cayman Chemical)
90
Cayman Chemical thermococcus piezophilus sp. nov
Isolates used in this study a
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Image Search Results


Synteny plot comparing the previously published genome of T. turnerae T7902 (GCA_000379165.1) and the new genome sequence and assembly presented here (GCA_037935975.1). A MUMmer3 plot was generated with NUCmer v3.1 using default settings to assess synteny and completion. Minimum exact matches of 20bp are represented as a dot with lines representing exact match lengths >20bp. Forward matches are displayed in red, while reverse matches are shown in blue.

Journal: bioRxiv

Article Title: Closing the genome of Teredinibacter turnerae T7902 by long-read nanopore sequencing

doi: 10.1101/2024.07.30.605897

Figure Lengend Snippet: Synteny plot comparing the previously published genome of T. turnerae T7902 (GCA_000379165.1) and the new genome sequence and assembly presented here (GCA_037935975.1). A MUMmer3 plot was generated with NUCmer v3.1 using default settings to assess synteny and completion. Minimum exact matches of 20bp are represented as a dot with lines representing exact match lengths >20bp. Forward matches are displayed in red, while reverse matches are shown in blue.

Article Snippet: We present the complete closed circular genome sequence derived from Oxford Nanopore sequencing of the shipworm endosymbiont Teredinibacter turnerae T7902 (DSM 15152, ATCC 39867), originally isolated from the shipworm Lyrodus pedicellatus ( ).

Techniques: Sequencing, Generated

Isolates used in this study a

Journal:

Article Title: Molecular Epidemiologic Evaluation of Endocarditis Due to Oerskovia turbata and CDC Group A-3 Associated with Contaminated Homograft Valves

doi: 10.1128/JCM.42.6.2495-2500.2004

Figure Lengend Snippet: Isolates used in this study a

Article Snippet: Source Geographic site (reference if applicable) O. turbata (ATCC, 25835 T ) W6114 KC1355 Soil Unknown O. turbata W6123 C4239 Unknown (human) New York ( 22 ) O. turbata W2796 Lung New York O. turbata W4083 Blood California ( 11 ) O. turbata W6035 Blood Wisconsin O. turbata W2622 Blood (patient 1) Colorado O. turbata W2728 Blood (patient 1) Colorado O. turbata W2729 Blood (patient 1) Colorado O. turbata (ATCC BAA-886) W6122 C8821 Blood (patient 1) Colorado ( 22 ) O. turbata W2732 C6926 243 Homograft valve Colorado ( 22 ) O. turbata W2734 C5919 199 Homograft valve Colorado ( 22 ) O. turbata W2736 C5918 197 Homograft valve Colorado ( 22 ) O. turbata W2739 C5520 145 Homograft valve Colorado ( 22 ) O. turbata W6120 (W2760, W2729) C5614 128 Homograft valve Colorado ( 22 ) O. turbata W6121 (W2738) C5519 139 Homograft valve Colorado ( 22 ) CDC group A-3 (ATCC BAA-788) W6929 (W2777) C2508 610A Blood (patient 2) Colorado ( 22 ) CDC group A-3 b W6124 (W2733) C6927 246 Homograft valve Colorado ( 22 ) C. hominis (DSM 9581 T , DMMZ CE40) W6264 Cerebrospinal fluid Switzerland ( 6 ) C. hominis (DMMZ CE39) W6263 Cerebrospinal fluid Switzerland ( 6 ) CDC group A-3 W6117 A3936 Blood Ohio ( 22 ) Open in a separate window a ARL, Actinomycete Reference Laboratory; SBS, Special Bacteriology Section; ATCC; American Type Culture Collection (Manassas, Va.); DSM, Deutsche Sammlung von Mikroorganismen Zellkulturen (Braunschweig, Germany); DMMZ, Department of Medical Microbiology, University of Zurich, Switzerland. b Previously identified as O. turbata.

Techniques:

Comparison of patient 1's, patient 2's, and the homograft valve isolates with the type and clinical reference strains of O. turbata ; C. hominis , and CDC group A-3

Journal:

Article Title: Molecular Epidemiologic Evaluation of Endocarditis Due to Oerskovia turbata and CDC Group A-3 Associated with Contaminated Homograft Valves

doi: 10.1128/JCM.42.6.2495-2500.2004

Figure Lengend Snippet: Comparison of patient 1's, patient 2's, and the homograft valve isolates with the type and clinical reference strains of O. turbata ; C. hominis , and CDC group A-3

Article Snippet: Source Geographic site (reference if applicable) O. turbata (ATCC, 25835 T ) W6114 KC1355 Soil Unknown O. turbata W6123 C4239 Unknown (human) New York ( 22 ) O. turbata W2796 Lung New York O. turbata W4083 Blood California ( 11 ) O. turbata W6035 Blood Wisconsin O. turbata W2622 Blood (patient 1) Colorado O. turbata W2728 Blood (patient 1) Colorado O. turbata W2729 Blood (patient 1) Colorado O. turbata (ATCC BAA-886) W6122 C8821 Blood (patient 1) Colorado ( 22 ) O. turbata W2732 C6926 243 Homograft valve Colorado ( 22 ) O. turbata W2734 C5919 199 Homograft valve Colorado ( 22 ) O. turbata W2736 C5918 197 Homograft valve Colorado ( 22 ) O. turbata W2739 C5520 145 Homograft valve Colorado ( 22 ) O. turbata W6120 (W2760, W2729) C5614 128 Homograft valve Colorado ( 22 ) O. turbata W6121 (W2738) C5519 139 Homograft valve Colorado ( 22 ) CDC group A-3 (ATCC BAA-788) W6929 (W2777) C2508 610A Blood (patient 2) Colorado ( 22 ) CDC group A-3 b W6124 (W2733) C6927 246 Homograft valve Colorado ( 22 ) C. hominis (DSM 9581 T , DMMZ CE40) W6264 Cerebrospinal fluid Switzerland ( 6 ) C. hominis (DMMZ CE39) W6263 Cerebrospinal fluid Switzerland ( 6 ) CDC group A-3 W6117 A3936 Blood Ohio ( 22 ) Open in a separate window a ARL, Actinomycete Reference Laboratory; SBS, Special Bacteriology Section; ATCC; American Type Culture Collection (Manassas, Va.); DSM, Deutsche Sammlung von Mikroorganismen Zellkulturen (Braunschweig, Germany); DMMZ, Department of Medical Microbiology, University of Zurich, Switzerland. b Previously identified as O. turbata.

Techniques: Comparison